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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DCBD2_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAPLRAA RSPQDPGGRA APAATGRAPL PSAGWCPLPP GRNSSSRPRL LLLLLLLLPD  60
   61 AGAQKGDGCG HTVLGPESGT LTSINYPHTY PNSTVCKWEI RVKTGERIRI KFGDFDIEDS 120
  121 DYCHLNYLKI FNGIGVSRTE IGKYCGLGLQ MNQSIESKGS EITVLFMSGI HASGRGFLAS 180
  181 YSVIDKQDLI TCLDTVSNFL EPEFSKYCPA GCLLPFAEIS GTIPHGYRDS SPLCMAGIHA 240
  241 GVVSDVLGGQ ISVVISKGTP YYESSLANNV TSMVGYLSTS LFTFKTSGCY GTLGMESGVI 300
  301 ADPQITASSV LEWTDHMGQE NSWKPEKARL RKPGPPWAAF ATDEHQWLQI DLNKEKKITG 360
  361 IVTTGSTLIE HNYYVSAYRV LYSDDGQKWT VYREPGAAQD KIFQGNKDYH KDVRNNFLPP 420
  421 IIARFIRVNP VQWQQKIAMK VELLGCQFTL KGRLPKLTQP PPPRNSNNLK NTTVHPKLGR 480
  481 APKFTQALQP RSRNDLPLLP AQTTATPDVK NTTVTPSVTK DVALAAVLVP VLVMALTTLI 540
  541 LILVCAWHWR NRKKKAEGTY DLPHWDRAGW WKGVKQLLPA KSVEHEETPV RYSNSEVSHL 600
  601 SPREVTTVLQ ADSAEYAQPL VGGIVGTLHQ RSTFKPEEGK EASYADLDPY NAPVQEVYHA 660
  661 YAEPLPVTGP EYATPIVMDM SGHSTASVGL PSTSTFRTAG NQPPALVGTY NTLLSRTDSC 720
  721 SSGQAQYDTP KGGKPAAAPE ELVYQVPQST QEASGAGRDE KFDAFKETL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle