YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD40L_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIETYSQPSP RSVATGLPAS MKIFMYLLTV FLITQMIGSV PFAVYLHRRL DKVEEEASLH  60
   61 EDFVFVKKLK RCNKGEGSLS LLNCEEMRRQ FEDLVKDISL NKEEKKEKSF EMQRGDEDPQ 120
  121 IAAHVVSEAN SNAASVLQWA KKGYYTMKSN LVVLENGRQL TVKREGLYYV YTQVTFCSNR 180
  181 EPLSQRPFIV SLWLKPSSGS ERILLRAANT HSSSKLCEQQ SIHLGGVFEL QAGASVFVNV 240
  241 TEASQVIHGI GFSSIGLLKL

Type	Start	End	Confidence
Cytoplasmic	1	22	0.57
Transmembrane Helix	23	45	0.85
Non-Cytoplasmic	46	260	0.65