YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NK3R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVPRGENW TDGTVEVGTH TGNLSSALGV TEWLALQAGN FSSALGLPAT TQAPSQVRAN  60
   61 LTNQFVQPSW RIALWSLAYG LVVAVAVFGN LIVIWIILAH KRMRTVTNYF LVNLAFSDAS 120
  121 VAAFNTLINF IYGLHSEWYF GANYCRFQNF FPITAVFASI YSMTAIAVDR YMAIIDPLKP 180
  181 RLSATATKIV IGSIWILAFL LAFPQCLYSK IKVMPGRTLC YVQWPEGPKQ HFTYHIIVII 240
  241 LVYCFPLLIM GVTYTIVGIT LWGGEIPGDT CDKYHEQLKA KRKVVKMMII VVVTFAICWL 300
  301 PYHVYFILTA IYQQLNRWKY IQQVYLASFW LAMSSTMYNP IIYCCLNKRF RAGFKRAFRW 360
  361 CPFIQVSSYD ELELKTTRFH PTRQSSLYTV SRMESVTVLF DPNDGDPTKS SRKKRAVPRD 420
  421 PSANGCSHRG SKSASTTSSF ISSPYTSVDE YS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.61
Transmembrane Helix	21	36	0.43
Non-Cytoplasmic	37	74	0.81
Transmembrane Helix	75	98	0.92
Cytoplasmic	99	108	0.88
Transmembrane Helix	109	132	0.89
Non-Cytoplasmic	133	149	0.89
Transmembrane Helix	150	168	0.93
Cytoplasmic	169	184	0.79
Transmembrane Helix	185	207	0.86
Non-Cytoplasmic	208	231	0.95
Transmembrane Helix	232	257	0.87
Cytoplasmic	258	283	0.90
Transmembrane Helix	284	306	0.89
Non-Cytoplasmic	307	325	0.87
Transmembrane Helix	326	346	0.93
Cytoplasmic	347	452	0.98