YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VGFR3_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.20
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPGAALNRR LWLCLGLLQG LANGYSMTPP TLNITEDSYV IDTGDSLSIS CRGQHPLEWT  60
   61 WRGAQEVLTT GGKDSEDTQV VQDCEGTEAR PYCKVLSLAQ THANNTGSYY CYYKYIKARI 120
  121 EGTTAASTYV FVRDFEQPFI NKPDTLLVNR KDSMWVPCLV SIPGLNITLR SQSSVLHPDG 180
  181 QEVLWDDRRG MRVPTLLLRD ALYLQCETTW GDQDFLSNPF LVHITGNELY DIQLYPKKSL 240
  241 ELLVGEKLVL NCTVWAEFDS GVTFDWDYPG KQAERAKWVP ERRSQQTHTE LSSILTIHNV 300
  301 SQHDLGPYVC EANNGIQQFR ESTEVIVHEK PFISVEWLKG PVLEATAGDE MVKLPVKLAA 360
  361 YPPPEFQWYK DRKAVTGRHN PHALVLKEVT EASAGVYTLA LWNSAAGLRQ NISLELVVNV 420
  421 PPHIHEKEAS SPSIYSRHSR QTLTCTTYGV PQPLSVQWHW RPWTPCKTFA QRSLRRRQPR 480
  481 DGMPQCRDWK EVTTQDAVNP IESLDTWTES VEGKNKTVSK LVIQDANVSA MYKCVVFNKV 540
  541 GQDERLIYFY VTTIPDGFSI ESEPSEDPLE GQSVRLSCRA DNYTYEHLRW YRLNLSTLHD 600
  601 AQGNPLLLDC KNVHLFATPL EANLEEAEPG ARHATLSLNI PRVAPEDEGD YVCEVQDRRS 660
  661 QDKHCHKKYL SVQALEAPRL TQNLTDLLVN VRTSLEMRCP VAGAHVPSIV WYKDERLLEK 720
  721 ESGIDLADSN QRLSIQRVRE EDAGRYLCSV CNAKGCVNSS ASVAVEGSED KGSMEIVILI 780
  781 GTGVIAVFFW VLLLLIFCNM KRPAHADIKT GYLSIIMDPG EVPLEEQCEY LSYDVSQWEF 840
  841 PRERLHLGRV LGHGAFGKVV EASAFGINKG SSCDTVAVKM LKEGATASEH RALMSELKIL 900
  901 IHIGNHLNVV NLLGACTKPN GPLMVIVEFC KYGNLSNFLR VKRETFDPYA EKSPEQRRRF 960
  961 RAMVEGAKAD RRRLGSTDRA LFTRFLMGKG SARRAPFVQE AEDLWLSPLT MEDLVCYSFQ1020
 1021 VARGMEFLAS RKCIHRDLAA RNILLSESDI VKICDFGLAR DIYKDPDYVR KGSARLPLKW1080
 1081 MAPESIFDKV YTTQSDVWSF GVLLWEIFSL GASPYPGVQI NEEFCQRLKD GTRMRAPELA1140
 1141 TPAIRHIMQS CWSGDPKARP AFSDLVEILG DLLQGGGWQE EEEECMALHS SQSSEEDGFM1200
 1201 QASTTALHIT EADAESSPPS MHCHSLAARY YNCVSFPGRL VRGTKAPGSS RMKTFEELPM1260
 1261 TPTTYKASVD NQTDSGMVLA SEEFEQIESR HRQEGSFSRK DPGQHMDISR GHPDLQGRRR1320
 1321 RPTQGAQGGK VFYNNEYGEV SQPCTEGDCC PSAGSTFFAD SNY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle