YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRSFFGAL WKSEASRIPP VNLPSVELAV QSNHYCHAQK DSGSHPNSEK QRARRKLYVA  60
   61 SAICLVFMIG EIIGGYLAQS LAIMTDAAHL LTDFASMLIS LFSLWVSSRP ATKTMNFGWQ 120
  121 RAEILGALLS VLSIWVVTGV LVYLAVQRLI SGDYEIKGDT MLITSGCAVA VNIIMGLALH 180
  181 QSGHGHSHGH SHEDSSQQQQ NPSVRAAFIH VVGDLLQSVG VLVAAYIIYF KPEYKYVDPI 240
  241 CTFLFSILVL GTTLTILRDV ILVLMEGTPK GVDFTTVKNL LLSVDGVEAL HSLHIWALTV 300
  301 AQPVLSVHIA IAQNVDAQAV LKVARDRLQG KFNFHTMTIQ IESYSEDMKS CQECQGPSE

Type	Start	End	Confidence
Cytoplasmic	1	56	0.99
Transmembrane Helix	57	78	0.94
Non-Cytoplasmic	79	86	0.79
Transmembrane Helix	87	107	0.85
Cytoplasmic	108	123	0.84
Transmembrane Helix	124	146	0.91
Non-Cytoplasmic	147	159	0.82
Transmembrane Helix	160	180	0.88
Cytoplasmic	181	205	0.80
Transmembrane Helix	206	229	0.87
Non-Cytoplasmic	230	235	0.74
Transmembrane Helix	236	257	0.85
Cytoplasmic	258	359	0.79