YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNK1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQSLAGSSC VRLVERHRSA WCFGFLVLGY LLYLVFGAVV FSSVELPYED LLRQELRKLK  60
   61 RRFLEEHECL SEPQLEQFLG RVLEASNYGV SVLSNASGNW NWDFTSALFF ASTVLSTTGY 120
  121 GHTVPLSDGG KAFCIIYSVI GIPFTLLFLT AVVQRVTVHV TRRPVLYFHI RWGFSKQVVA 180
  181 IVHAVLLGFV TVSCFFFIPA AVFSVLEDDW NFLESFYFCF ISLSTIGLGD YVPGEGYNQK 240
  241 FRELYKIGIT CYLLLGLIAM LVVLETFCEL HELKKFRKMF YVKKDKDEDQ VHIMEHDQLS 300
  301 FSSITEQAAG LKEEQKQNEP FVASQSPPYE DGSANH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.96
Non-Cytoplasmic	42	103	0.95
Transmembrane Helix	104	124	0.81
Cytoplasmic	125	132	0.74
Transmembrane Helix	133	153	0.93
Non-Cytoplasmic	154	178	0.76
Transmembrane Helix	179	203	0.90
Cytoplasmic	204	211	0.70
Transmembrane Helix	212	232	0.86
Non-Cytoplasmic	233	246	0.76
Transmembrane Helix	247	268	0.91
Cytoplasmic	269	336	0.85