YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAB45_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWLVAMTSR QRSLCGLAAH GLWFLGLVLL MDATARPANH SFSRERAANR DENEIIPPDH  60
   61 LNGVKLEMDG HLNKDFHQEV FLGKDMDGFD EDSEPRRSRR KLMVIFSKVD VNTDRRISAK 120
  121 EMQHWIMEKT AEHFQEAVKE NKLHFRAVDP DGDGHVSWDE YKVKFLASKG HNEREIADAI 180
  181 KNHEELKVDE ETQEVLGNLR DRWYQADNPP ADLLLTEDEF LSFLHPEHSR GMLKFMVKEI 240
  241 VRDLDQDGDK QLSLPEFISL PVGTVENQQG QDIDDNWVKD RKKEFEELID SNHDGIVTME 300
  301 ELENYMDPMN EYNALNEAKQ MIAIADENQN HHLEPEEILK YSEFFTGSKL MDYARNVHEE 360
  361 F

Type	Start	End	Confidence
Signal Peptide	1	35	0.88
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	361	0.99