YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PE2R2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNSFNDSRR VENCESRQYL LSDESPAISS VMFTAGVLGN LIALALLARR WRGDTGCSAG  60
   61 SRTSISLFHV LVTELVLTDL LGTCLISPVV LASYSRNQTL VALAPESRAC TYFAFTMTFF 120
  121 SLATMLMLFA MALERYLAIG HPYFYRRRVS RRGGLAVLPA IYGVSLLFCS LPLLNYGEYV 180
  181 QYCPGTWCFI QHGRTAYLQL YATVLLLLIV AVLGCNISVI LNLIRMQLRS KRSRCGLSGS 240
  241 SLRGPGSRRR GERTSMAEET DHLILLAIMT ITFAVCSLPF TIFAYMDETS SRKEKWDLRA 300
  301 LRFLSVNSII DPWVFVILRP PVLRLMRSVL CCRTSLRAPE APGASCSTQQ TDLCGQL

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.96
Transmembrane Helix	27	48	0.91
Cytoplasmic	49	66	0.90
Transmembrane Helix	67	91	0.87
Non-Cytoplasmic	92	111	0.90
Transmembrane Helix	112	133	0.92
Cytoplasmic	134	152	0.92
Transmembrane Helix	153	174	0.93
Non-Cytoplasmic	175	199	0.92
Transmembrane Helix	200	224	0.91
Cytoplasmic	225	262	0.97
Transmembrane Helix	263	284	0.95
Non-Cytoplasmic	285	299	0.90
Transmembrane Helix	300	318	0.62
Cytoplasmic	319	357	0.64