YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VMP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENGTNCDQ RRGAMSKEQH NGSFTDPSSV NEKKRRDREE RQNIVLWRQP LITLQYFSLE  60
   61 TLVVLKEWTS KLWHRQSMVV SFFLLLAALV ATYYVEGAHQ QYVQRIEKQF LLYAYWIGLG 120
  121 ILSSVGLGTG LHTFLLYLGP HIASVTLAAY ECNSVNFPEP PYPDQIICPD EEGTEGAISL 180
  181 WSIISKVRIE ACMWGIGTAI GELPPYFMAR AARLSGAEPD DEEYQEFEEM LEHAETAQDF 240
  241 ASRAKLAVQK LVQKVGFFGI LACASIPNPL FDLAGITCGH FLVPFWTFFG ATLIGKAIIK 300
  301 MHIQKIFVIV TFSKHIVEQM VAFIGAVPGI GPSLQKPFQE YLEAQRQKLH HRSEAGTAQG 360
  361 ENWLSWTFEK LVVAMVCYFI LSIINSMAQS YAKRIQQRLN SEEKTK

Type	Start	End	Confidence
Cytoplasmic	1	75	0.86
Transmembrane Helix	76	95	0.92
Non-Cytoplasmic	96	111	0.71
Transmembrane Helix	112	136	0.88
Cytoplasmic	137	250	0.81
Transmembrane Helix	251	271	0.84
Non-Cytoplasmic	272	277	0.69
Transmembrane Helix	278	299	0.87
Cytoplasmic	300	310	0.80
Transmembrane Helix	311	331	0.78
Non-Cytoplasmic	332	370	0.85
Transmembrane Helix	371	388	0.93
Cytoplasmic	389	406	0.85