YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STX8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPDPWFSTY DSTCQIAQEI AEKIQERNQC ERRGEKTPKL TLTIRTLLKN LKVKIDLLKD  60
   61 LLLRAVSTRQ ITQLEGDRRQ NLLDDLVTRE RLLLASFKNE GSEPDLIRSS LMSEEAKRGT 120
  121 PNPWLCEEPE ETRGLGFDEI RQQQQKIIQE QDAGLDALSS IISRQKQMGQ EIGNELDEQN 180
  181 EIIDDLANLV ENTDEKLRTE ARRVTLVDRK SASCGMIMVI LLLLVAIVVV AVWPTN

Type	Start	End	Confidence
Cytoplasmic	1	211	0.96
Transmembrane Helix	212	233	0.95
Non-Cytoplasmic	234	236	0.77