YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SV2B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.98
Transmembrane Helix	109	133	0.85
Non-Cytoplasmic	134	148	0.91
Transmembrane Helix	149	169	0.93
Cytoplasmic	170	176	0.89
Transmembrane Helix	177	198	0.87
Non-Cytoplasmic	199	205	0.60
Transmembrane Helix	206	224	0.95
Cytoplasmic	225	235	0.85
Transmembrane Helix	236	258	0.90
Non-Cytoplasmic	259	274	0.88
Transmembrane Helix	275	297	0.90
Cytoplasmic	298	388	0.98
Transmembrane Helix	389	408	0.91
Non-Cytoplasmic	409	536	0.97
Transmembrane Helix	537	559	0.90
Cytoplasmic	560	565	0.87
Transmembrane Helix	566	586	0.92
Non-Cytoplasmic	587	591	0.89
Transmembrane Helix	592	614	0.86
Cytoplasmic	615	626	0.78
Transmembrane Helix	627	646	0.90
Non-Cytoplasmic	647	653	0.65
Transmembrane Helix	654	674	0.91
Cytoplasmic	675	683	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDYRYRDNY EGYAPNDGYY RGNEQNPEED AQSDVTEGHD EEDEIYEGEY QGIPHPDDVK  60
   61 SKQTKMAPSR ADGLRGQADL MAERMEDEEQ LAHQYETIID ECGHGRFQWT LFFVLVLALM 120
  121 ADGVEVFVVS FALPSAEKDM CLSSSKKGML GLIVYLGMMA GAFILGGLAD KLGRKKVLSM 180
  181 SLAINASFAS LSSFVQGYGA FLFCRLISGI GIGGSLPIVF AYFSEFLSRE KRGEHLSWLG 240
  241 IFWMTGGIYA SAMAWSIIPH YGWGFSMGTN YHFHSWRVFV IVCALPATVS MVALKFMPES 300
  301 PRFLLEMGKH DEAWMILKQV HDTNMRAKGT PEKVFTVSHI KTPKQMDEFI EIQSSTGTWY 360
  361 QRWLVRFMTI FKQVWDNALY CVMGPYRMNT LILAVVWFTM ALSYYGLTVW FPDMIRYFQD 420
  421 EEYKSKMKVF FGEHVHGATI NFTMENQIHQ HGKLVNDKFI KMYFKHVLFE DTFFDKCYFE 480
  481 DVTSTDTYFK NCTIESTTFY NTDLYKHKFI DCRFINSTFL EQKEGCHMDF EEDNDFLIYL 540
  541 VSFLGSLSVL PGNIISALLM DRIGRLKMIG GSMLISAVCC FFLFFGNSES AMIGWQCLFC 600
  601 GTSIAAWNAL DVITVELYPT NQRATAFGIL NGLCKLGAIL GNTIFASFVG ITKVVPILLA 660
  661 AASLVGGGLV ALRLPETREQ VLM