YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LMAN1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSRRRGPQ AGAQSFFCAL LLSFSQFVGS DGMGGDAAAP GAAGTQAELP HRRFEYKYSF  60
   61 KGPHLVQSDG TVPFWAHAGN AIPSADQIRI APSLKSQRGS VWTKTKAAFE NWEVEVTFRV 120
  121 TGRGRIGADG LAIWYTENQG LDGPVFGSAD MWNGVGIFFD SFDNDGKKNN PAIVVVGNNG 180
  181 QINYDHQNDG ATQALASCQR DFRNKPYPVR AKITYYQKTL TVMINNGFTP DKNDYEFCAK 240
  241 VENMVIPTQG HFGISAATGG LADDHDVLSF LTFQLTEPGK EPPTPEKDIS EKEKEKYQEE 300
  301 FEHFQQELDK KKEEFQKGHP DLQGQPADDI FESIGDRELR QVFEGQNRIH LEIKQLNRQL 360
  361 DMILDEQRRY VSSLTEEISR RGAGTPGQPG QVSQQELDTV VRTQLEILRQ VNEMKNSMRE 420
  421 TMRLVSGVQH PGSAGVYETT QHFMDIKEHL HIVKRDIDSL AQRSMSSNEK PKCPDLPAFP 480
  481 SCLSTVHFVI FIVVQTVLFI GYIMYRTQQE AAAKKFF

Type	Start	End	Confidence
Signal Peptide	1	30	0.97
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	485	0.99
Transmembrane Helix	486	505	0.93
Cytoplasmic	506	517	0.92