YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCKAR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSPARQHL VESSRMDVVD SLLMNGSNIT PPCELGLENE TLFCLDQPQP SKEWQSALQI  60
   61 LLYSIIFLLS VLGNTLVITV LIRNKRMRTV TNIFLLSLAV SDLMLCLFCM PFNLIPNLLK 120
  121 DFIFGSAVCK TTTYFMGTSV SVSTFNLVAI SLERYGAICR PLQSRVWQTK SHALKVIAAT 180
  181 WCLSFTIMTP YPIYSNLVPF TKNNNQTANM CRFLLPSDAM QQSWQTFLLL ILFLLPGIVM 240
  241 VVAYGLISLE LYQGIKFDAS QKKSAKEKKP STGSSTRYED SDGCYLQKSR PPRKLELQQL 300
  301 SSGSGGSRLN RIRSSSSAAN LIAKKRVIRM LIVIVVLFFL CWMPIFSANA WRAYDTVSAE 360
  361 KHLSGTPISF ILLLSYTSSC VNPIIYCFMN KRFRLGFMAT FPCCPNPGPP GVRGEVGEEE 420
  421 DGRTIRALLS RYSYSHMSTS APPP

Type	Start	End	Confidence
Non-Cytoplasmic	1	59	0.95
Transmembrane Helix	60	82	0.92
Cytoplasmic	83	92	0.84
Transmembrane Helix	93	115	0.92
Non-Cytoplasmic	116	131	0.91
Transmembrane Helix	132	152	0.90
Cytoplasmic	153	171	0.90
Transmembrane Helix	172	193	0.91
Non-Cytoplasmic	194	225	0.95
Transmembrane Helix	226	247	0.94
Cytoplasmic	248	326	0.98
Transmembrane Helix	327	348	0.90
Non-Cytoplasmic	349	367	0.86
Transmembrane Helix	368	389	0.93
Cytoplasmic	390	444	0.99