YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17221620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.73
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	145	0.76
Transmembrane Helix	146	164	0.75
Cytoplasmic	165	173	0.67
Transmembrane Helix	174	197	0.78
Non-Cytoplasmic	198	201	0.54
Transmembrane Helix	202	222	0.70
Cytoplasmic	223	231	0.76
Transmembrane Helix	232	253	0.93
Non-Cytoplasmic	254	259	0.73
Transmembrane Helix	260	279	0.87
Cytoplasmic	280	349	0.98
Transmembrane Helix	350	371	0.91
Non-Cytoplasmic	372	377	0.82
Transmembrane Helix	378	398	0.85
Cytoplasmic	399	407	0.74
Transmembrane Helix	408	427	0.94
Non-Cytoplasmic	428	434	0.74
Transmembrane Helix	435	455	0.93
Cytoplasmic	456	465	0.70
Transmembrane Helix	466	488	0.90
Non-Cytoplasmic	489	495	0.67
Transmembrane Helix	496	515	0.93
Cytoplasmic	516	551	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFQDLITQI GCLGRFQILH LIFVLICFIL VVPHTVLENF TAAIPSHRCW VPILDNNTMS  60
   61 DNNSRILSQD DLLRISIPMD SNLRPEKCRR YIQPQWDLLH LNGTFSTVTE PDTEPCVDGW 120
  121 VYDQSTFLST TVTQWDLVCG SQTLNSVAKF IYMTGIFIGH LMGGHLSDKF GRKFIVTCGL 180
  181 LTLAVTETSV AFAPTFLIYC SLRFLTGISS SCIRTNSALL ILEWTSPKFQ AMVMALIFSA 240
  241 GGIGQVLLGV LAFGIRNWQH LQLAMSVPVF FLLIPTRWLS ESARWLIITN KPQEGLKELI 300
  301 KVAHINGIKN SRDVLTLEVV KTTMKDELEA AETKPSPLVL FRTPNLRKRI CLLSFVRCVS 360
  361 LISTVGLLIN LQYLSNKVFL LQCLYGVVCT PANLLGNFSM NYMGRRTTQI IFMSVMGISI 420
  421 LSITFLTQEM QIPRLVLASL GGAISSASLT STAVLSNELV PTVIRATALG VIGIFGSAGA 480
  481 ALSPLLMILM TYSASLPWII YGVLPILSSL VVLLLPETRN QPLPDSIQDV ENKRKSSREV 540
  541 KKDAVAKVTP F