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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PTPRA_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.41
Topology Confidence: 0.12
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSWFILILF GSGLIHISAN NTTTVSPSLG TTRLIKTSTT ESAKEENKTS NSTSSVISLS  60
   61 VTPTFSPNLT LEPTYVTTVN SSHSDNGTKR AASTESGGTT ISPNGTYGTW LTDNQFTDAR 120
  121 TEPWEGNSSS AATTPETFPP ADETPIIAVM VALSSLLVIL FIIIVLYMLR FKKYKQAGSH 180
  181 SNSFRLSNGR TEDVEPQSVP LLARSPSTNR KYPPLPVDKL EEEINRRMAD DNKLFREEFN 240
  241 ALPACPIQAT CEAASKEENK EKNRYVNLLP YDHSRVHLTP VEGVPDSDYI NASFINGYQE 300
  301 KNKFIAAQGP KEETVNDFWR MIWEQNTATI VMVTNLKERK ECKCAQYWPD QGCWPYGNVR 360
  361 VSVEDVTVLV DYTVRKFCIQ QVGDVTNRKP QRLITQFHFT SWPDFGVPFT PIGMLKFLKK 420
  421 VKACNPQYAG AIVVHCSAGV GRTGTFVVID AMLDMMHSER KVDVYGFVSR IRAQRCQMVQ 480
  481 TDMQYVFIYQ ALLEHYLYGD TELEVTSLDT HLQKIYNKIP GTSNNGLEEE FKKLTSIKIQ 540
  541 NDKMRTGYLP ANMKKNRVLQ IIPYEFNRVI IPVKRGEENT DYVNASFIDP YRQKDSYIAS 600
  601 QGPLLHTTED FWRMIWEWKS CSIVMLTELE ERGQEKCAQY WPSDGLVSYG DITVELKKEE 660
  661 ECESYTVRDL LVTNTRENKS RQIRQFHFHG WPEVGIPSDG KGMINIIAAV QKQQQQSGNH 720
  721 PITVHCSAGA GRTGTFCALS TVLECVKAEG ILDVFQTVKT LRLQRPHMVQ ILEQYEFCYK 780
  781 VVQEYIDAFS DYANFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle