YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26449155, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATDVTDTT QDEAAYNSYY FDESLPKPCT KEGIKAFGEV FLPPLYSLVF LLGLFGNSVV  60
   61 VLVLFKYKRL KSMTDVYLLN LAISDLLFVL SLPFWGYYAA DQWVFGLGLC KIISWMYLVG 120
  121 FYSGIFFIML MSIDRYLAIV HAVFSLRART LTYGVITSLI TWSVAVFASL PGLLFSTCDT 180
  181 ENNHTYCKTQ YSVNSTTWKV LSSLEINVLG LVIPLGIMLF CYSMIIRTLR HCKNEKKNRA 240
  241 VRMIFAVVVL FLGFWTPYNV VLFLETLVEL EVLQDCTLER YLDYAIQATE TLAFIHCCLN 300
  301 PVIYFFLGEK FRKYIAQLFR TCRGPPVLCQ HCDFLQISSA DTSSSSYTQS TVDHDFRDAL 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.98
Transmembrane Helix	45	65	0.94
Cytoplasmic	66	75	0.88
Transmembrane Helix	76	97	0.94
Non-Cytoplasmic	98	112	0.82
Transmembrane Helix	113	133	0.87
Cytoplasmic	134	150	0.81
Transmembrane Helix	151	174	0.86
Non-Cytoplasmic	175	205	0.94
Transmembrane Helix	206	226	0.91
Cytoplasmic	227	239	0.89
Transmembrane Helix	240	258	0.92
Non-Cytoplasmic	259	291	0.84
Transmembrane Helix	292	308	0.72
Cytoplasmic	309	360	0.74