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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LGR4_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGPLGLLCF LALGLLGSAG PSGAAPPLCA APCSCDGDRR VDCSGKGLTA VPEGLSAFTQ  60
   61 ALDISMNNIT QLPEDAFKSF PFLEELQLAG NDLSLIHPKA LSGLKELKVL TLQNNQLRTV 120
  121 PSEAIHGLSA LQSLRLDANH ITSVPEDSFE GLVQLRHLWL DDNSLTEVPV RPLSNLPTLQ 180
  181 ALTLALNNIS SIPDFAFTNL SSLVVLHLHN NKIKSLSQHC FDGLDNLETL DLNYNYLDEF 240
  241 PQAIKALPSL KELGFHSNSI SVIPDGAFGG NPLLRTIHLY DNPLSFVGNS AFHNLSDLHC 300
  301 LVIRGASLVQ WFPNLTGTVH LESLTLTGTK ISSIPDDLCQ NQKMLRTLDL SYNNIRDLPS 360
  361 FNGCRALEEI SLQRNQISLI KENTFQGLTS LRILDLSRNL IREIHSGAFA KLGTITNLDV 420
  421 SFNELTSFPT EGLNGLNQLK LVGNFKLKDA LAARDFANLR SLSVPYAYQC CAFWGCDSYA 480
  481 NLNTEDNSPQ EHSVTKEKGA TDAANVTSTA ENEEHSQIII HCTPSTGAFK PCEYLLGSWM 540
  541 IRLTVWFIFL VALLFNLLVI LTVFASCSSL PASKLFIGLI SVSNLLMGIY TGILTFLDAV 600
  601 SWGRFAEFGI WWETGSGCKV AGSLAVFSSE SAVFLLTLAA VERSVFAKDL MKHGKSSHLR 660
  661 QFQVAALLAL LGAAVAGCFP LFHGGQYSAS PLCLPFPTGE TPSLGFTVTL VLLNSLAFLL 720
  721 MAIIYTKLYC NLEKEDLSEN SQSSVIKHVA WLIFTNCIFF CPVAFFSFAP LITAISISPE 780
  781 IMKSVTLIFF PLPACLNPVL YVFFNPKFKE DWKLLKRRVT RKHGSVSVSI SSQGGCGEQD 840
  841 FYYDCGMYSH LQGNLTVCDC CESFLLTKPV SCKHLIKSHS CPVLTAASCQ RPEAYWSDCG 900
  901 TQSAHSDYAD EEDSFVSDSS DQVQACGRAC FYQSRGFPLV RYAYNLQRVR D

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle