YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRLHR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLPPGTTG DPDLFSGPSP AGSTPANQSA EASESNVSAT VPRAAAVTPF QSLQLVHQLK  60
   61 GLIVMLYSIV VVVGLVGNCL LVLVIARVRR LHNVTNFLIG NLALSDVLMC AACVPLTLAY 120
  121 AFEPRGWVFG GGLCHLVFFL QPVTVYVSVF TLTTIAVDRY VVLVHPLRRR ISLKLSAYAV 180
  181 LGIWALSAVL ALPAAVHTYH VELKPHDVRL CEEFWGSQER QRQIYAWGLL LGTYLLPLLA 240
  241 ILLSYVRVSV KLRNRVVPGS VTQSQADWDR ARRRRTFCLL VVVVVVFALC WLPLHIFNLL 300
  301 RDLDPRAIDP YAFGLVQLLC HWLAMSSACY NPFIYAWLHD SFREELRKML LSWPRKIVPH 360
  361 GQNMTVSVVI

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.93
Transmembrane Helix	63	85	0.94
Cytoplasmic	86	96	0.87
Transmembrane Helix	97	121	0.89
Non-Cytoplasmic	122	136	0.81
Transmembrane Helix	137	157	0.86
Cytoplasmic	158	174	0.82
Transmembrane Helix	175	196	0.91
Non-Cytoplasmic	197	223	0.95
Transmembrane Helix	224	246	0.94
Cytoplasmic	247	275	0.97
Transmembrane Helix	276	297	0.93
Non-Cytoplasmic	298	317	0.88
Transmembrane Helix	318	339	0.89
Cytoplasmic	340	370	0.97