YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.97
Non-Cytoplasmic	43	148	0.98
Transmembrane Helix	149	170	0.89
Cytoplasmic	171	176	0.90
Transmembrane Helix	177	198	0.93
Non-Cytoplasmic	199	205	0.75
Transmembrane Helix	206	229	0.83
Cytoplasmic	230	235	0.89
Transmembrane Helix	236	257	0.92
Non-Cytoplasmic	258	263	0.80
Transmembrane Helix	264	283	0.96
Cytoplasmic	284	345	0.98
Transmembrane Helix	346	365	0.93
Non-Cytoplasmic	366	374	0.71
Transmembrane Helix	375	396	0.91
Cytoplasmic	397	404	0.84
Transmembrane Helix	405	423	0.95
Non-Cytoplasmic	424	433	0.66
Transmembrane Helix	434	452	0.88
Cytoplasmic	453	462	0.76
Transmembrane Helix	463	484	0.91
Non-Cytoplasmic	485	489	0.70
Transmembrane Helix	490	512	0.89
Cytoplasmic	513	551	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTFDQALRK AGEFGRFQRR VFLLLCLTGV TFAFLFVGVV FLGSQPDYYW CRGPRATALA  60
   61 ERCAWSPEEE WNLTTPELHV PAERRGQGHC HRYLLEDTNT SSELSCDPLA AFPNRSAPLV 120
  121 PCSGDWRYVE THSTIVSQFD LVCGNAWMLD LTQAILNLGF LAGAFTLGYA ADRYGRLIVY 180
  181 LISCFGVGIT GVVVAFAPNF SVFVIFRFLQ GVFGKGAWMT CFVIVTEIVG SKQRRIVGIV 240
  241 IQMFFTLGII ILPGIAYFTP SWQGIQLAIS LPSFLFLLYY WVVPESPRWL ITRKQGEKAL 300
  301 QILRRVAKCN GKHLSSNYSE ITVTDEEVSN PSCLDLVRTP QMRKCTLILM FAWFTSAVVY 360
  361 QGLVMRLGLI GGNLYMDFFI SGLVELPGAL LILLTIERLG RRLPFAASNI VAGVSCLVTA 420
  421 FLPEGIPWLR TTVATLGRLG ITMAFEIVYL VNSELYPTTL RNFGVSLCSG LCDFGGIIAP 480
  481 FLLFRLAAIW LELPLIIFGI LASVCGGLVM LLPETKGIAL PETVEDVEKL GSSQLHQCGR 540
  541 KKKTQVSTSN V