YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169642118, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.72
Transmembrane Helix	37	61	0.75
Non-Cytoplasmic	62	74	0.59
Transmembrane Helix	75	95	0.80
Cytoplasmic	96	102	0.59
Transmembrane Helix	103	119	0.77
Non-Cytoplasmic	120	125	0.72
Transmembrane Helix	126	148	0.93
Cytoplasmic	149	157	0.91
Transmembrane Helix	158	181	0.90
Non-Cytoplasmic	182	188	0.83
Transmembrane Helix	189	209	0.96
Cytoplasmic	210	243	0.93
Transmembrane Helix	244	261	0.94
Non-Cytoplasmic	262	281	0.87
Transmembrane Helix	282	304	0.91
Cytoplasmic	305	311	0.82
Transmembrane Helix	312	330	0.93
Non-Cytoplasmic	331	336	0.82
Transmembrane Helix	337	358	0.94
Cytoplasmic	359	373	0.89
Transmembrane Helix	374	398	0.83
Non-Cytoplasmic	399	428	0.94
Transmembrane Helix	429	448	0.94
Cytoplasmic	449	490	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQGKKKKRA ANRSIMLAKK IIIKDGGTPQ GIGSPSVYHA VIVIFLEFFA WGLLTAPTLV  60
   61 VLHETFPKHT FLMNGLIQGV KGLLSFLSAP LIGALSDVWG RKSFLLLTVF FTCAPIPLMK 120
  121 ISPWWYFAVI SVSGVFAVTF SVVFAYVADI TQEHERSMAY GLVSATFAAS LVTSPAIGAY 180
  181 LGRVYGDSLV VVLATAIALL DICFILVAVP ESLPEKMRPA SWGAPISWEQ ADPFASLKKV 240
  241 GQDSIVLLIC ITVFLSYLPE AGQYSSFFLY LRQIMKFSPE SVAAFIAVLG ILSIIAQTIV 300
  301 LSLLMRSIGN KNTILLGLGF QILQLAWYGF GSEPWMMWAA GAVAAMSSIT FPAVSALVSR 360
  361 TADADQQGVV QGMITGIRGL CNGLGPALYG FIFYIFHVEL KELPITGPDL GTNTSPQHHF 420
  421 EQNSIIPGPP FLFGACSVLL ALLVALFIPE HTNLSLRSSS WRKHCGGHSH PHSTQAPGEA 480
  481 KEPLLQDTNV