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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25453410, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFGDELGG RYGGTGGGER ARGGGAGGAG GPGQGGLPPG QRVLYKQSIA QRARTMALYN  60
   61 PIPVKQNCFT VNRSLFVFSE DNVVRKYAKR ITEWPPFEYM ILATIIANCI VLALEQHLPD 120
  121 GDKTPMSERL DDTEPYFIGI FCFEAGIKII ALGFVFHKGS YLRNGWNVMD FVVVLTGILA 180
  181 TAGTDFDLRT LRAVRVLRPL KLVSGIPSLQ VVLKSIMKAM VPLLQIGLLL FFAILMFAII 240
  241 GLEFYMGKFH KACFPNSTDA EPVGDFPCGK EAPARLCDSD TECREYWPGP NFGITNFDNI 300
  301 LFAILTVFQC ITMEGWTDIL YNTNDAAGNT WNWLYFIPLI IIGSFFMLNL VLGVLSGEFA 360
  361 KERERVENRR AFLKLRRQQQ IERELNGYLE WIFKAEEVML AEEDKNAEEK SPLDVLKRAA 420
  421 TKKSRNDLIH AEEGEDRFVD LCAAGSPFAR ASLKSGKTES SSYFRRKEKM FRFLIRRMVK 480
  481 AQSFYWVVLC VVALNTLCVA MVHYNQPQRL TTALYFAEFV FLGLFLTEMS LKMYGLGPRS 540
  541 YFRSSFNCFD FGVIVGSIFE VVWAAIKPGT SFGISVLRAL RLLRIFKVTK YWNSLRNLVV 600
  601 SLLNSMKSII SLLFLLFLFI VVFALLGMQL FGGQFNFQDE TPTTNFDTFP AAILTVFQIL 660
  661 TGEDWNAVMY HGIESQGGVS KGMFSSFYFI VLTLFGNYTL LNVFLAIAVD NLANAQELTK 720
  721 DEEEMEEAAN QKLALQKAKE VAEVSPMSAA NISIAARQQN SAKARSVWEQ RASQLRLQNL 780
  781 RASCEALYSE MDPEERLRYA STRHVRPDMK THMDRPLVVE PGRDGLRGPA GNKSKPEGTE 840
  841 ATEGADPPRR HHRHRDRDKT SASTPAGGEQ DRTDCPKAES TETGAREERA RPRRSHSKEA 900
  901 PGADTQVRCE RSRRHHRRGS PEEATEREPR RHRAHRHAQD SSKEGKEGTA PVLVPKGERR 960
  961 ARHRGPRTGP RETENSEEPT RRHRAKHKVP PTLEPPEREV AEKESNVVEG DKETRNHQPK1020
 1021 EPRCDLEAIA VTGVGSLHML PSTCLQKVDE QPEDADNQRN VTRMGSQPSD PSTTVHVPVT1080
 1081 LTGPPGEATV VPSANTDLEG QAEGKKEAEA DDVLRRGPRP IVPYSSMFCL SPTNLLRRFC1140
 1141 HYIVTMRYFE MVILVVIALS SIALAAEDPV RTDSFRNNAL KYMDYIFTGV FTFEMVIKMI1200
 1201 DLGLLLHPGA YFRDLWNILD FIVVSGALVA FAFSGSKGKD INTIKSLRVL RVLRPLKTIK1260
 1261 RLPKLKAVFD CVVNSLKNVL NILIVYMLFM FIFAVIAVQL FKGKFFYCTD ESKELERDCR1320
 1321 GQYLDYEKEE VEAQPRQWKK YDFHYDNVLW ALLTLFTVST GEGWPMVLKH SVDATYEEQG1380
 1381 PSPGFRMELS IFYVVYFVVF PFFFVNIFVA LIIITFQEQG DKVMSECSLE KNERACIDFA1440
 1441 ISAKPLTRYM PQNKQSFQYK TWTFVVSPPF EYFIMAMIAL NTVVLMMKFY DAPYEYELML1500
 1501 KCLNIVFTSM FSLECILKII AFGVLNYFRD AWNVFDFVTV LGSITDILVT EIAETNNFIN1560
 1561 LSFLRLFRAA RLIKLLRQGY TIRILLWTFV QSFKALPYVC LLIAMLFFIY AIIGMQVFGN1620
 1621 IALDDGTSIN RHNNFRTFLQ ALMLLFRSAT GEAWHEIMLS CLGNRACDPH ANASECGSDF1680
 1681 AYFYFVSFIF LCSFLMLNLF VAVIMDNFEY LTRDSSILGP HHLDEFIRVW AEYDPAACGR1740
 1741 ISYNDMFEML KHMSPPLGLG KKCPARVAYK RLVRMNMPIS NEDMTVHFTS TLMALIRTAL1800
 1801 EIKLAPAGTK QHQCDAELRK EISSVWANLP QKTLDLLVPP HKPDEMTVGK VYAALMIFDF1860
 1861 YKQNKTTRDQ THQAPGGLSQ MGPVSLFHPL KATLEQTQPA VLRGARVFLR QKSATSLSNG1920
 1921 GAIQTQESGI KESLSWGTQR TQDVLYEARA PLERGHSAEI PVGQPGALAV DVQMQNMTLR1980
 1981 GPDGEPQPGL ESQGRAASMP RLAAETQPAP NASPMKRSIS TLAPRPHGTQ LCNTVLDRPP2040
 2041 PSQVSHHHHH RCHRRRDKKQ RSLEKGPSLS VDTEGAPSTA AGSGLPHGEG STGCRRERKQ2100
 2101 ERGRSQERRQ PSSSSSEKQR FYSCDRFGSR EPPQPKPSLS SHPISPTAAL EPGPHPQGSG2160
 2161 SVNGSPLMST SGASTPGRGG RRQLPQTPLT PRPSITYKTA NSSPVHFAEG QSGLPAFSPG2220
 2221 RLSRGLSEHN ALLQKEPLSQ PLASGSRIGS DPYLGQRLDS EASAHNLPED TLTFEEAVAT2280
 2281 NSGRSSRTSY VSSLTSQSHP LRRVPNGYHC TLGLSTGVRA RHSYHHPDQD HWC

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