YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSG_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQLTGEQT LDHYEDSTQA SIFTYTNSNS TRGPFEGPNY HIAPRWVYHL TSTWMILVVI  60
   61 ASVFTNGLVL AATMRFKKLR HPLNWILVNL AVADLAETII ASTISVVNQI YGYFVLGHPL 120
  121 CVIEGYIVSL CGITGLWSLA IISWERWLVV CKPFGNVRFD AKLATVGIVF SWVWAAVWTA 180
  181 PPIFGWSRYW PYGLKTSCGP DVFSGTSYPG VQSYMMVLMV TCCIFPLSII VLCYLQVWLA 240
  241 IRAVAKQQKE SESTQKAEKE VTRMVVVMVF AYCLCWGPYT FFACFATAHP GYAFHPLVAS 300
  301 LPSYFAKSAT IYNPIIYVFM NRQFRNCILQ LFGKKVDDSS ELSSTSKTEV SSVSSVSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.96
Transmembrane Helix	50	72	0.89
Cytoplasmic	73	84	0.81
Transmembrane Helix	85	107	0.87
Non-Cytoplasmic	108	121	0.78
Transmembrane Helix	122	142	0.91
Cytoplasmic	143	162	0.84
Transmembrane Helix	163	184	0.89
Non-Cytoplasmic	185	214	0.95
Transmembrane Helix	215	239	0.91
Cytoplasmic	240	263	0.91
Transmembrane Helix	264	286	0.86
Non-Cytoplasmic	287	297	0.68
Transmembrane Helix	298	319	0.67
Cytoplasmic	320	359	0.82