YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT2A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILCEDNIS LSSIPNSLMQ LGDGPRLYHN DFNSRDANTS EASNWTIDAE NRTNLSCEGY  60
   61 LPPTCLSILH LQEKNWSALL TTVVIILTIA GNILVIMAVS LEKKLQNATN YFLMSLAIAD 120
  121 MLLGFLVMPV SMLTILYGYR WPLPSKLCAI WIYLDVLFST ASIMHLCAIS LDRYVAIQNP 180
  181 IHHSRFNSRT KAFLKIIAVW TISVGISMPI PVFGLQDDSK VFKEGSCLLA DDNFVLIGSF 240
  241 VAFFIPLTIM VITYFLTIKS LQKEATLCVS DLSTRAKLAS FSFLPQSSLS SEKLFQRSIH 300
  301 REPGSYAGRR TMQSISNEQK ACKVLGIVFF LFVVMWCPFF ITNIMAVICK ESCNENVIGA 360
  361 LLNVFVWIGY LSSAVNPLVY TLFNKTYRSA FSRYIQCQYK ENRKPLQLIL VNTIPALAYK 420
  421 SSQLQVGQKK NSQEDAEQTV DDCSMVTLGK QQSEENCTDN IETVNEKVSC V

Type	Start	End	Confidence
Non-Cytoplasmic	1	77	0.85
Transmembrane Helix	78	99	0.94
Cytoplasmic	100	110	0.78
Transmembrane Helix	111	136	0.82
Non-Cytoplasmic	137	148	0.78
Transmembrane Helix	149	171	0.82
Cytoplasmic	172	191	0.90
Transmembrane Helix	192	213	0.92
Non-Cytoplasmic	214	233	0.94
Transmembrane Helix	234	257	0.91
Cytoplasmic	258	323	0.97
Transmembrane Helix	324	346	0.87
Non-Cytoplasmic	347	360	0.83
Transmembrane Helix	361	383	0.86
Cytoplasmic	384	471	0.95