YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LFG2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQGKLSVAN KAPGTEGQQQ ANGEKKDAPA VPSAPPSYEE ATSGEGLKAG AFPQGPTAVP  60
   61 LHPSWAYVDP SSSSGYEGGF PAGHHELFST FSWDDQKVRQ LFIRKVYTIL LVQLLVTLAV 120
  121 VALFTFCDVV KDYVQANPGW YWASYAVFFA TYLTLACCSG PRRHFPWNLI LLTIFTLSMA 180
  181 YLTGMLSSYY NTTSVLLCLG ITALVCLSVT IFSFQTKFDF TSCHGVLFVL LMTLFFSGLL 240
  241 LAILLPFQYV PWLHAVYAVL GAGVFTLFLA FDTQLLMGNR RHSLSPEEYI FGALNIYLDI 300
  301 IYIFTFFLQL FGTNRE

Type	Start	End	Confidence
Cytoplasmic	1	105	0.99
Transmembrane Helix	106	127	0.92
Non-Cytoplasmic	128	138	0.87
Transmembrane Helix	139	158	0.92
Cytoplasmic	159	164	0.84
Transmembrane Helix	165	185	0.91
Non-Cytoplasmic	186	192	0.75
Transmembrane Helix	193	214	0.93
Cytoplasmic	215	223	0.84
Transmembrane Helix	224	245	0.94
Non-Cytoplasmic	246	252	0.78
Transmembrane Helix	253	273	0.91
Cytoplasmic	274	288	0.88
Transmembrane Helix	289	311	0.86
Non-Cytoplasmic	312	316	0.84