YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3646426, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEARTSRWY FGGLASCGAA CCTHPLDLLK VHLQTQQEVK LRMTGMALQV VRTDGFLALY  60
   61 NGLSASLCRQ MTYSLTRFAI YETMRDYMTK DSQGPLPFYS KVLLGGISGL TGGFVGTPAD 120
  121 LVNVRMQNDM KLPLSQRRNY SHALDGLYRV AREEGLKKLF SGATMASSRG ALVTVGQLSC 180
  181 YDQAKQLVLS TGYLSDNIFT HFLSSFIAGG CATFLCQPLD VLKTRLMNSK GEYQGVFHCA 240
  241 VETAKLGPQA FFKGLVPAGV RLVPHTVLTF MFLEQLRKHF GIKVAT

Type	Start	End	Confidence
Cytoplasmic	1	8	0.59
Transmembrane Helix	9	26	0.49
Non-Cytoplasmic	27	197	0.71
Transmembrane Helix	198	219	0.52
Cytoplasmic	220	286	0.55