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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16903210, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQQAPPWV HVALILFLLS LGGAIEIPMD LTQPPTITKQ SVKDHIVDPR DNILIECEAK  60
   61 GNPAPSFHWT RNSRFFNIAK DPRVSMRRRS GTLVIDFRSG GRPEEYEGEY QCFARNKFGT 120
  121 ALSNRIRLQV SKSPLWPKEN LDPVVVQEGA PLTLQCNPPP GLPSPVIFWM SSSMEPITQD 180
  181 KRVSQGHNGD LYFSNVMLQD MQTDYSCNAR FHFTHTIQQK NPFTLKVLTN NPYNDSSLRN 240
  241 HPDIYSARGV AERTPSFMYP QGTSSSQMVL RGMDLLLECI ASGVPTPDIA WYKKGGDLPS 300
  301 DKAKFENFNK ALRITNVSEE DSGEYFCLAS NKMGSIRHTI SVRVKAAPYW LDEPKNLILA 360
  361 PGEDGRLVCR ANGNPKPTVQ WLVNGDPLQS APPNPNREVA GDTIIFRDTQ ISSRAVYQCN 420
  421 TSNEHGYLLA NAFVSVLDVP PRMLSPRNQL IRVILYNRTR LDCPFFGSPI PTLRWFKNGQ 480
  481 GSNLDGGNYH VYENGSLEIK MIRKEDQGIY TCVATNILGK AENQVRLEVK DPTRIYRMPE 540
  541 DQVAKRGTTV QLECRVKHDP SLKLTVSWLK DDEPLYIGNR MKKEDDSLTI FGVAERDQGS 600
  601 YTCMASTELD QDLAKAYLTV LGRPDRPRDL ELTDLAERSV RLTWIPGDDN NSPITDYVVQ 660
  661 FEEDQFQPGV WHDHSKFPGS VNSAVLHLSP YVNYQFRVIA VNEVGSSHPS LPSERYRTSG 720
  721 APPESNPSDV KGEGTRKNNM EITWTPMNAT SAFGPNLRYI VKWRRRETRE TWNNVTVWGS 780
  781 RYVVGQTPVY VPYEIRVQAE NDFGKGPEPE TVIGYSGEDY PRAAPTEVKI RVLNSTAISL 840
  841 QWNRVYPDTV QGQLREYRAY YWRESSLLKN LWVSQKRQQA SFPGDRPRGV VGRLFPYSNY 900
  901 KLEMVVVNGR GDGPRSETKE FTTPEGVPSA PRRFRVRQPN LETINLEWDH PEHPNGILIG 960
  961 YTLRYVPFNG TKLGKQMVEN FSPNQTKFSV QRADPVSRYR FSLSARTQVG SGEAATEESP1020
 1021 TPPNEATPTA AYTNNQTDIA TQGWFIGLMC AIALLVLILL IVCFIKRSRG GKYPVREKKD1080
 1081 VPLGPEDPKE EDGSFDYSDE DNKPLQGSQT SLDGTIKQQE SDDSLVDYGE GGEGQFNEDG1140
 1141 SFIGQYTVRK DKEETEGNES SEATSPVNAI YSLA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle