YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SNG1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGAYGAGK AGGAFDPYTL VRQPHTILRV VSWVFSIVVF GSIVNEGYLN NPEEEEEFCI  60
   61 YNRNPNACSY GVTVGVLAFL TCLVYLALDV YFPQISSVKD RKKAVLSDIG VSAFWAFFWF 120
  121 VGFCFLANQW QVSKPKDNPL NEGTDAARAA IAFSFFSIFT WAGQAVLAFQ RYQIGADSAL 180
  181 FSQDYMDPSQ DSSMPYAPYV EPSAGSDPTG MGGTYQHPAN AFDAEPQGYQ SQGY

Type	Start	End	Confidence
Cytoplasmic	1	26	0.92
Transmembrane Helix	27	44	0.88
Non-Cytoplasmic	45	69	0.81
Transmembrane Helix	70	92	0.88
Cytoplasmic	93	104	0.88
Transmembrane Helix	105	127	0.86
Non-Cytoplasmic	128	145	0.86
Transmembrane Helix	146	168	0.84
Cytoplasmic	169	234	0.90