YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4185298
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTLMTAGP TASATGPVQT TTSPTHTNTY YLRTFGHNTM DAVPRIDHYR HTAAQLGEKL  60
   61 LRPSLAELHD ELEKEPFEDG FANGEESTPT RDAVVTYTAE SKGVVKFGWI KGVLVRCMLN 120
  121 IWGVMLFIRL SWIVGQAGIG LSVLVIPMAT VVTSLPGLST SPISTNGILT GGGTFSLISK 180
  181 SGAQIWRCNW LDLPFAQCRG RWKESGGIHR DGKVELLKEH SKLMIDEFND IRIIGAITVV 240
  241 VFVGISVAGM EWETKAQMVI LVILLLAIAD FVIGTFISLD SKKPKGFFGY KSEIFSENFG 300
  301 PDFREEETFF SVFAIFFPAA TGILAGANIS GDLADPQSAI PKGTLLAILI TTVVYIGIAV 360
  361 SVGSCAVRD

Type	Start	End	Confidence
Cytoplasmic	1	125	0.92
Transmembrane Helix	126	151	0.75
Non-Cytoplasmic	152	157	0.52
Transmembrane Helix	158	178	0.65
Cytoplasmic	179	230	0.91
Transmembrane Helix	231	250	0.94
Non-Cytoplasmic	251	257	0.78
Transmembrane Helix	258	279	0.93
Cytoplasmic	280	308	0.94
Transmembrane Helix	309	329	0.93
Non-Cytoplasmic	330	343	0.81
Transmembrane Helix	344	367	0.88
Cytoplasmic	368	369	0.91