YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.61
Transmembrane Helix	12	35	0.69
Non-Cytoplasmic	36	101	0.47
Transmembrane Helix	102	123	0.62
Cytoplasmic	124	140	0.65
Transmembrane Helix	141	162	0.87
Non-Cytoplasmic	163	170	0.65
Transmembrane Helix	171	193	0.77
Cytoplasmic	194	225	0.66
Transmembrane Helix	226	247	0.90
Non-Cytoplasmic	248	339	0.73
Transmembrane Helix	340	361	0.93
Cytoplasmic	362	488	0.98
Transmembrane Helix	489	509	0.94
Non-Cytoplasmic	510	520	0.84
Transmembrane Helix	521	541	0.89
Cytoplasmic	542	552	0.72
Transmembrane Helix	553	573	0.76
Non-Cytoplasmic	574	577	0.57
Transmembrane Helix	578	595	0.56
Cytoplasmic	596	615	0.70
Transmembrane Helix	616	638	0.90
Non-Cytoplasmic	639	691	0.82
Transmembrane Helix	692	713	0.86
Cytoplasmic	714	1193	0.96
Transmembrane Helix	1194	1214	0.92
Non-Cytoplasmic	1215	1232	0.87
Transmembrane Helix	1233	1253	0.83
Cytoplasmic	1254	1262	0.78
Transmembrane Helix	1263	1283	0.91
Non-Cytoplasmic	1284	1330	0.91
Transmembrane Helix	1331	1350	0.93
Cytoplasmic	1351	1440	0.90
Transmembrane Helix	1441	1463	0.95
Non-Cytoplasmic	1464	1518	0.90
Transmembrane Helix	1519	1541	0.87
Cytoplasmic	1542	1550	0.83
Transmembrane Helix	1551	1574	0.87
Non-Cytoplasmic	1575	1590	0.74
Transmembrane Helix	1591	1611	0.76
Cytoplasmic	1612	1639	0.72
Transmembrane Helix	1640	1661	0.89
Non-Cytoplasmic	1662	1697	0.76
Transmembrane Helix	1698	1717	0.56
Cytoplasmic	1718	1737	0.77
Transmembrane Helix	1738	1762	0.90
Non-Cytoplasmic	1763	2212	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFGDEMPG RYGAGGGGSG PAAGVVVGAA GGRGAGGSRQ GGQPGAQRMY KQSMAQRART  60
   61 MALYNPIPVR QNCLTVNRSL FLFSEDNVVR KYAKKITEWP PFEYMILATI IANCIVLALE 120
  121 QHLPDDDKTP MSERLDDTEP YFIGIFCFEA GIKIVALGFA FHKGSYLRNG WNVMDFVVVL 180
  181 TGILATVGTE FDLRTLRAVR VLRPLKLVSG IPSLQVVLKS IMKAMIPLLQ IGLLLFFAIL 240
  241 IFAIIGLEFY MGKFHTTCFE EGTDDIQGES PAPCGTEEPA RTCPNGTKCQ PYWEGPNNGI 300
  301 TQFDNILFAV LTVFQCITME GWTDLLYNSN DASGNTWNWL YFIPLIIIGS FFMLNLVLGV 360
  361 LSGEFAKERE RVENRRAFLK LRRQQQIERE LNGYMEWISK AEEVILAEDE TDVEQRHPFD 420
  421 GALRRATLKK SKTDLLNPEE AEDQLADIAS VGSPFARASI KSAKLENSTF FHKKERRMRF 480
  481 YIRRMVKTQA FYWTVLSLVA LNTLWLAIVH YNQPEWLSDF LYYAEFIFLG LFMSEMFIKM 540
  541 YGLGTRPYFH SSFNCFDCGV IIGSIFEVIW AVIKPGTSFG ISVLRALRLL RIFKVTKYWA 600
  601 SLRNLVVSLL NSMKSIISLL FLLFLFIVVF ALLGMQLFGG QFNFDEGTPP TNFDTFPAAI 660
  661 MTVFQILTGE DWNEVMYDEI KSQGGVQGGM VFSIYFIVLT LFGNYTLLNV FLAIAVDNLA 720
  721 NAQELTKDEQ EEEEAANQKL ALQKAKEVAE VSPLSAANMS IAVKEQQKNQ KPAKSVWEQR 780
  781 TSEMRKQNLL ASREALYGDA AERWPTTYAR PLRPDVKTHL DRPLVVDPQE NRNNNTNKSR 840
  841 APEALRQTAR PRESARDPDA RRAWPSSPER APGREGPYGR ESEPQQREHA PPREHVPWDA 900
  901 DPERAKAGDA PRRHTHRPVA EGEPRRHRAR RRPGDEPDDR PERRPRPRDA TRPARAADGE 960
  961 GDDGERKRRH RHGPPAHDDR ERRHRRRKES QGSGVPMSGP NLSTTRPIQQ DLGRQDLPLA1020
 1021 EDLDNMKNNK LATGEPASPH DSLGHSGLPP SPAKIGNSTN PGPALATNPQ NAASRRTPNN1080
 1081 PGNPSNPGPP KTPENSLIVT NPSSTQPNSA KTARKPEHMA VEIPPACPPL NHTVVQVNKN1140
 1141 ANPDPLPKKE EEKKEEEEAD PGEDGPKPMP PYSSMFILST TNPLRRLCHY ILNLRYFEMC1200
 1201 ILMVIAMSSI ALAAEDPVQP NAPRNNVLRY FDYVFTGVFT FEMVIKMIDL GLVLHQGAYF1260
 1261 RDLWNILDFI VVSGALVAFA FTGNSKGKDI NTIKSLRVLR VLRPLKTIKR LPKLKAVFDC1320
 1321 VVNSLKNVFN ILIVYMLFMF IFAVVAVQLF KGKFFHCTDE SKEFERDCRG KYLLYEKNEV1380
 1381 KARDREWKKY DFHYDNVLWA LLTLFTVSTG EGWPQVLKHS VDATFENQGP SPGYRMEMSI1440
 1441 FYVVYFVVFP FFFVNIFVAL IIITFQEQGD KMMEEYSLEK NERACIDFAI SAKPLTRHMP1500
 1501 QNKQSFQYRM WQFVVSPPFE YTIMAMIALN TIVLMMKFYG ASVAYENALR VFNIVFTSLF1560
 1561 SLECVLKVMA FGILNYFRDA WNIFDFVTVL GSITDILVTE FGNNFINLSF LRLFRAARLI1620
 1621 KLLRQGYTIR ILLWTFVQSF KALPYVCLLI AMLFFIYAII GMQVFGNIGI DGEDEDSDED1680
 1681 EFQITEHNNF RTFFQALMLL FRSATGEAWH NIMLSCLSGK PCDKNSGIQK PECGNEFAYF1740
 1741 YFVSFIFLCS FLMLNLFVAV IMDNFEYLTR DSSILGPHHL DEYVRVWAEY DPAACGRIHY1800
 1801 KDMYSLLRVI SPPLGLGKKC PHRVACKRLL RMDLPVADDN TVHFNSTLMA LIRTALDIKI1860
 1861 AKGGADKQQM DAELRKEMMA IWPNLSQKTL DLLVTPHKST DLTVGKIYAA MMIMEYYRQS1920
 1921 KAKKLQAMRE EQNRTPLMFQ RMEPPSPTQE GGPSQNALPS TQLDPGGGLM AQESSMKESP1980
 1981 SWVTQRAQEM FQKTGTWSPE RGPPIDMPNS QPNSQSVEMR EMGTDGYSDS EHYLPMEGQT2040
 2041 RAASMPRLPA ENQRRRGRPR GNNLSTISDT SPMKRSASVL GPKARRLDDY SLERVPPEEN2100
 2101 QRYHQRRRDR GHRTSERSLG RYTDVDTGLG TDLSMTTQSG DLPSKDRDQD RGRPKDRKHR2160
 2161 PHHHHHHHHH HPPAPDRERY AQERPDTGRA RAREQRWSRS PSEGREHATH RQ