YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S19A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.94
Transmembrane Helix	27	44	0.92
Non-Cytoplasmic	45	65	0.93
Transmembrane Helix	66	85	0.87
Cytoplasmic	86	92	0.74
Transmembrane Helix	93	115	0.89
Non-Cytoplasmic	116	121	0.77
Transmembrane Helix	122	142	0.90
Cytoplasmic	143	152	0.84
Transmembrane Helix	153	173	0.92
Non-Cytoplasmic	174	179	0.72
Transmembrane Helix	180	201	0.92
Cytoplasmic	202	269	0.98
Transmembrane Helix	270	290	0.93
Non-Cytoplasmic	291	303	0.88
Transmembrane Helix	304	325	0.87
Cytoplasmic	326	332	0.69
Transmembrane Helix	333	353	0.88
Non-Cytoplasmic	354	361	0.57
Transmembrane Helix	362	381	0.78
Cytoplasmic	382	387	0.75
Transmembrane Helix	388	410	0.80
Non-Cytoplasmic	411	426	0.87
Transmembrane Helix	427	446	0.95
Cytoplasmic	447	512	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPTGQVGEK QACEEPRQDR ELKSWRWLVF YLCFFGFMAQ LRPGESFITP YLLERNFTKE  60
   61 QVTNEIIPML PYSHLAVLVP IFLLTDYLRY KPVLVLQCLS FVCVWLLLLL GTSVVHMQLM 120
  121 EVFYSITMAA RIAYSSYIFS LVQPSRYQRM ASYSRAAVLL GVFISSVLGQ VLVTLGGIST 180
  181 YMLNCISLGF ILFSLSLSLF LKRPKRSLFF NRSALVQGAL PCELDQMHPG PGRPEPRKLE 240
  241 RMLGTCRDSF LVRMLSELVK NVRQPQLRLW CLWWVFNSAG YYLITYYVHV LWKITDSRLN 300
  301 YNGAVDAAST LLSAITAFTA GFVNIRWALW SKLVIASVIA IQAGLVFCMF QIPDIWVCYV 360
  361 TFVLFRGAYQ FLVPIATFQI ASSLSKELCA LVFGINTFLA TALKTSITLV VSDKRGLGLQ 420
  421 VHQQFRIYFM YFLTLSIICL AWAGLDGLRY YRRGRHQPLA QAQALSPLED SVQAISLQDG 480
  481 DLRRPQPSAP QLLPEDGSVE DGRADLRVEA KA