YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GATA6_RAT, GAT6_RAT
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQTLAALSS QGPAAYDGAP GGFVHSAAAA AAAAAAASSP VYVPTTRVGS MLPGLPYLQG  60
   61 AGSGPSNHAG GAGAHPGWPQ ASADSPPYGG GGAAGGGAAG PGGAGSATAH ASARFPYSPS 120
  121 PPMANGAARD PGGYVAAGGA GAGSVSGGGG SLAAMGGREH QYSSLSAARP LNGTYHHHHH 180
  181 HHPTYSPYMG APLTPAWPAG PFETPVLHSL QSRAGAPLPV PRGPSADLLE DLSESRECVN 240
  241 CGSIQTPLWR RDGTGHYLCN ACGLYSKMNG LSRPLIKPQK RVPSSRRLGL SCANCHTTTT 300
  301 TLWRRNAEGE PVCNACGLYM KLHGVPRPLA MKKEGIQTRK RKPKNINKSK ACSGNSSVPM 360
  361 TPTSSSSNSD DCTKNTSPPT QSTASGVGAS VMSAVGESAN PENSDLKYSG QDGLYIGVSL 420
  421 SSPAEVTSSV RQDSWCALAL A

Type	Start	End	Confidence
Cytoplasmic	1	20	0.43
Transmembrane Helix	21	43	0.77
Non-Cytoplasmic	44	90	0.57
Transmembrane Helix	91	113	0.70
Cytoplasmic	114	132	0.73
Transmembrane Helix	133	156	0.80
Non-Cytoplasmic	157	441	0.85