YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149030094, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCYFQLRPSC TSAPYRWTGV SVPIPVIGLR DESKVFVNNT TCVLNDPNFV LIGSFVAFFI  60
   61 PLTIMVITYF LTIYVLRRQT LMLLRGHTEE ELANMSLNFL NCCCKKNGGE EENAPNPNPD 120
  121 QKPRRKKKEK RPRGTMQAIN NEKKASKVLG IVFFVFLIMW CPFFITNILS VLCGKACNQK 180
  181 LMEKLLNVFV WIGYVCSGIN PLVYTLFNKI YRRAFSKYLR CDYKPDKKPP VRQIPRVAAT 240
  241 ALSGRELNVN IYRHTNERVA RKANDPEPGI EMQVENLELP VNPSNVVSER ISSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.84
Transmembrane Helix	54	76	0.91
Cytoplasmic	77	147	0.98
Transmembrane Helix	148	169	0.89
Non-Cytoplasmic	170	187	0.85
Transmembrane Helix	188	207	0.93
Cytoplasmic	208	294	0.96