YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OMD_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCLRPIYVL FFCFVVRVYG QYEAYQWDED YEQEPSEDYE PEFQFHQNIE YGAPFYQNIL  60
   61 GCAKECFCPT NFPTSMYCDN RKLKTIPDIP MHIQQLNLQF NDIEAVTADS FINATHLKEI 120
  121 NLSHNKIKSQ KIDYGVFAKL SNLQQLHLDH NNLEEFPFPL PKSLERLLLG YNEISTLPTH 180
  181 AMDGLVNVTM LDLCYNHLSD STLKGKILSK LEKLMQLNLC NNRLESMPPG LPLSLMYLSL 240
  241 ENNSISSIPE DYFQKLPKLH ALRISHNKLE DIPYDIFNLS NLIELNVGHN KLKQAFYIPR 300
  301 NLEHLYLQNN EIQSINVTMM CPSLDPLHHH HLTYLRVDQN KLKEPISSYI FFCFPRIHSI 360
  361 YYGEQRSTNG ETIQLKTQVF RRYQDEEEEE EDDSQDHTLE GQEETEEHFN SHYYEMQAWQ 420
  421 NTI

Type	Start	End	Confidence
Signal Peptide	1	20	0.85
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	423	0.99