YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S20A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.73
Transmembrane Helix	7	26	0.95
Non-Cytoplasmic	27	42	0.69
Transmembrane Helix	43	64	0.54
Cytoplasmic	65	111	0.57
Transmembrane Helix	112	131	0.89
Non-Cytoplasmic	132	146	0.75
Transmembrane Helix	147	169	0.89
Cytoplasmic	170	182	0.86
Transmembrane Helix	183	203	0.92
Non-Cytoplasmic	204	211	0.78
Transmembrane Helix	212	235	0.93
Cytoplasmic	236	485	0.99
Transmembrane Helix	486	505	0.85
Non-Cytoplasmic	506	531	0.84
Transmembrane Helix	532	553	0.90
Cytoplasmic	554	571	0.73
Transmembrane Helix	572	591	0.67
Non-Cytoplasmic	592	623	0.47
Transmembrane Helix	624	651	0.84
Cytoplasmic	652	656	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMDGYLWMV ILGFIIAFIL AFSVGANDVA NSFGTAVGSG VVTLRQACIL ASIFETTGSV  60
   61 LLGAKVGETI RKGIIDVNLY NETVETLMAG EVSAMVGSAV WQLIASFLRL PISGTHCIVG 120
  121 STIGFSLVAI GPKGVQWMEL VKIVASWFIS PLLSGFMSGV LFILIRMFIL TKEDPVPNGL 180
  181 QALPLFYAAT IAINVFSIMY TGAPVLGLSL PIWAIALISF GVALLFAFFV WLFVCPWMKR 240
  241 KIAGRLEKES ALSRASDESL RKVQEAESPV FKELPGAKAS DDSAVPLTSL AGEAAGASEG 300
  301 TSAGNHPRAS YGRALSMTHG SAKSPISNGT FGFEGHMRND GHVYHTVHKD SGLYKDLLHK 360
  361 IHVDKGPEEK PAQENNYRLL RRNNSYTCYT AAICGMPVHA TFRASDTSSA PEDSEKLVGD 420
  421 TVSYSKKRLR YDSYSSYCNA VAEAEIEAEE GGVEMRLASE LTDPDQPHED PAEDEKEEKD 480
  481 SAEVHLLFHF LQVLTACFGS FAHGGNDVSN AIGPLVALWL IYKQGGVTQE AATPVWLLFY 540
  541 GGVGICTGLW VWGRRVIQTM GKDLTPITPS SGFTIELASA FTVVIASNIG LPVSTTHCKV 600
  601 GSVVAVGWIR SRKAVDWRLF RNIFIAWFVT VPVAGLFSAA IMALLMYICG FVSSSR