YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13994217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELAPVNLSE GNGSDPEPPA EPRPLFGIGV ENFITLVVFG LIFAMGVLGN SLVITVLARS  60
   61 KPGKPRSTTN LFILNLSIAD LGYLLFCIPF QATVYALPTW VLGAFICKFI HYFFTVSMLV 120
  121 SIFTLAAMSV DRYVAIVHSR RSSSLRVSRQ RAAGRGPSSG RCPSLWPRRW PTTSAFFIGT 180
  181 ATKPSAGSTG PTNSTRRLTW CALSSLVTFC PYCSSAFAMP RFSIICIKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.96
Transmembrane Helix	34	57	0.91
Cytoplasmic	58	70	0.89
Transmembrane Helix	71	93	0.87
Non-Cytoplasmic	94	109	0.78
Transmembrane Helix	110	131	0.89
Cytoplasmic	132	197	0.85
Transmembrane Helix	198	219	0.66
Non-Cytoplasmic	220	229	0.43