YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MPCP_RAT
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSVAHLAR ANPFNAPHLQ LVHDVSGPRS PPGPPRRSRH LAAAAVEGYS CEFGSMKYYA  60
   61 LCGFGGVLSC GLTHTAVVPL DLVKCRMQVD PQKYKGIFNG FSITLKEDGV RGLAKGWAPT 120
  121 LIGYSMQGLC KFGFYEVFKA LYSNILGEEN TYLWRTSLYL AASASAEFFA DIALAPMEAA 180
  181 KVRIQTQPGY ANTLREAVPK MYKEEGLNAF YKGVAPVWMR QIPYTMMKFA CFERTVEALY 240
  241 KFVVPKPRSE CTKAEQLVVT FVAGYIAGVF CAIVSHPADS VVSVLNKEKG STASQVLQRL 300
  301 GFRGVWKGLF ARIIMIGTLT ALQWFIYDSV KVYFRLPRPP PPEMPESLKK KLGLTE

Type	Start	End	Confidence
Cytoplasmic	1	256	0.68
Transmembrane Helix	257	276	0.71
Non-Cytoplasmic	277	307	0.66
Transmembrane Helix	308	327	0.90
Cytoplasmic	328	356	0.64