YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GALR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELAPVNLSE GNGSDPEPPA EPRPLFGIGV ENFITLVVFG LIFAMGVLGN SLVITVLARS  60
   61 KPGKPRSTTN LFILNLSIAD LAYLLFCIPF QATVYALPTW VLGAFICKFI HYFFTVSMLV 120
  121 SIFTLAAMSV DRYVAIVHSR RSSSLRVSRN ALLGVGFIWA LSIAMASPVA YYQRLFHRDS 180
  181 NQTFCWEHWP NQLHKKAYVV CTFVFGYLLP LLLICFCYAK VLNHLHKKLK NMSKKSEASK 240
  241 KKTAQTVLVV VVVFGISWLP HHVIHLWAEF GAFPLTPASF FFRITAHCLA YSNSSVNPII 300
  301 YAFLSENFRK AYKQVFKCRV CNESPHGDAK EKNRIDTPPS TNCTHV

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.97
Transmembrane Helix	34	57	0.91
Cytoplasmic	58	70	0.90
Transmembrane Helix	71	93	0.88
Non-Cytoplasmic	94	108	0.82
Transmembrane Helix	109	130	0.91
Cytoplasmic	131	149	0.87
Transmembrane Helix	150	171	0.91
Non-Cytoplasmic	172	198	0.94
Transmembrane Helix	199	222	0.92
Cytoplasmic	223	242	0.96
Transmembrane Helix	243	264	0.92
Non-Cytoplasmic	265	279	0.77
Transmembrane Helix	280	304	0.69
Cytoplasmic	305	346	0.93