YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPY4R_RAT
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSHLMASL SPAFLQGKNG TNPLDSLYNL SDGCQDSADL LAFIITTYSV ETVLGVLGNL  60
   61 CLIFVTTRQK EKSNVTNLLI ANLAFSDFLM CLICQPLTVT YTIMDYWIFG EVLCKMLTFI 120
  121 QCMSVTVSIL SLVLVALERH QLIINPTGWK PSISQAYLGI VVIWFISCFL SLPFLANSIL 180
  181 NDLFHYNHSK VVEFLEDKVV CFVSWSSDHH RLIYTTFLLL FQYCVPLAFI LVCYMRIYQR 240
  241 LQRQRRAFHT HTCSSRVGQM KRINGMLMAM VTAFAVLWLP LHVFNTLEDW YQEAIPACHG 300
  301 NLIFLMCHLF AMASTCVNPF IYGFLNINFK KDIKALVLTC RCRPPQGEPE PLPLSTVHTD 360
  361 LSKGSMRMGS KSNVM

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.71
Transmembrane Helix	44	65	0.70
Cytoplasmic	66	77	0.85
Transmembrane Helix	78	99	0.89
Non-Cytoplasmic	100	116	0.79
Transmembrane Helix	117	137	0.95
Cytoplasmic	138	155	0.93
Transmembrane Helix	156	176	0.95
Non-Cytoplasmic	177	212	0.96
Transmembrane Helix	213	238	0.87
Cytoplasmic	239	262	0.97
Transmembrane Helix	263	284	0.90
Non-Cytoplasmic	285	301	0.92
Transmembrane Helix	302	325	0.88
Cytoplasmic	326	375	0.98