YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S15A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.86
Transmembrane Helix	58	77	0.73
Non-Cytoplasmic	78	84	0.83
Transmembrane Helix	85	104	0.92
Cytoplasmic	105	113	0.73
Transmembrane Helix	114	136	0.87
Non-Cytoplasmic	137	142	0.75
Transmembrane Helix	143	165	0.89
Cytoplasmic	166	183	0.89
Transmembrane Helix	184	205	0.91
Non-Cytoplasmic	206	216	0.87
Transmembrane Helix	217	237	0.94
Cytoplasmic	238	297	0.96
Transmembrane Helix	298	316	0.93
Non-Cytoplasmic	317	345	0.94
Transmembrane Helix	346	367	0.91
Cytoplasmic	368	379	0.84
Transmembrane Helix	380	397	0.93
Non-Cytoplasmic	398	614	0.93
Transmembrane Helix	615	634	0.71
Cytoplasmic	635	644	0.70
Transmembrane Helix	645	668	0.88
Non-Cytoplasmic	669	674	0.65
Transmembrane Helix	675	697	0.94
Cytoplasmic	698	729	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPFQKNESK ETLFSPVSTE EMLPRPPSPP KKSPPKIFGS SYPVSIAFIV VNEFCERFSY  60
   61 YGMKAVLTLY FLYFLHWNED TSTSVYHAFS SLCYFTPILG AAIADSWLGK FKTIIYLSLV 120
  121 YVLGHVFKSL GAIPILGGKM LHTILSLVGL SLIALGTGGI KPCVAAFGGD QFEEEHAEAR 180
  181 TRYFSVFYLA INAGSLISTF ITPMLRGDVK CFGQDCYALA FGVPGLLMVL ALVVFAMGSK 240
  241 MYRKPPPEGN IVAQVIKCIW FALCNRFRNR SGDLPKRQHW LDWAAEKYPK HLIADVKALT 300
  301 RVLFLYIPLP MFWALLDQQG SRWTLQANKM NGDLGFFVLQ PDQMQVLNPF LVLIFIPLFD 360
  361 LVIYRLISKC RINFSSLRKM AVGMILACLA FAVAALVETK INGMIHPQPA SQEIFLQVLN 420
  421 LADGDVKVTV LGSRNNSLLV ESVSSFQNTT HYSKLHLEAK SQDLHFHLKY NSLSVHNDHS 480
  481 VEEKNCYQLL IHQDGESISS MLVKDTGIKP ANGMAAIRFI NTLHKDLNIS LDTDAPLSVG 540
  541 KDYGVSAYRT VLRGKYPAVH CETEDKVFSL DLGQLDFGTT YLFVITNITS QGLQAWKAED 600
  601 IPVNKLSIAW QLPQYVLVTA AEVMFSVTGL EFSYSQAPSS MKSVLQAAWL LTVAVGNIIV 660
  661 LVVAQFSGLA QWAEFVLFSC LLLVVCLIFS VMAYYYVPLK SEDTREATDK QIPAVQGNMI 720
  721 NLETKNTRL