YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLD3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMGLEITGT SLAVLGWLCT IVCCALPMWR VSAFIGSSII TAQITWEGLW MNCVVQSTGQ  60
   61 MQCKMYDSLL ALPQDLQAAR ALIVVSILLA AFGLLVALVG AQCTNCVQDE TAKAKITIVA 120
  121 GVLFLLAAVL TLVPVSWSAN TIIRDFYNPL VPEAQKREMG TGLYVGWAAA ALQLLGGALL 180
  181 CCSCPPREKY APTKILYSAP RSTGPGTGTG TAYDRKDYV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	31	0.84
Non-Cytoplasmic	32	77	0.85
Transmembrane Helix	78	101	0.89
Cytoplasmic	102	115	0.83
Transmembrane Helix	116	138	0.89
Non-Cytoplasmic	139	162	0.90
Transmembrane Helix	163	184	0.87
Cytoplasmic	185	219	0.93