YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD28_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLRLLFLAL SFFSVQVTEN KILVKQSPLL VVDNNEVSLS CRYSYNLLAK EFRASLYKGV  60
   61 NSDVEVCVGN GNFTYQPQFR PNVGFNCDGN FDNETVTFRL WNLDVNHTDI YFCKIEVMYP 120
  121 PPYLDNEKSN GTIIHIKEKH LCHAQTSPKL FWPLVVVAGV LLCYGLLVTV TLCIIWTNSR 180
  181 RNRLLQSDYM NMTPRRLGPT RKHYQPYAPA RDFAAYRP

Type	Start	End	Confidence
Signal Peptide	1	20	0.91
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	153	0.98
Transmembrane Helix	154	176	0.94
Cytoplasmic	177	218	0.97