YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSN1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.98
Transmembrane Helix	82	103	0.91
Non-Cytoplasmic	104	132	0.92
Transmembrane Helix	133	154	0.93
Cytoplasmic	155	160	0.93
Transmembrane Helix	161	183	0.91
Non-Cytoplasmic	184	191	0.88
Transmembrane Helix	192	214	0.90
Cytoplasmic	215	222	0.79
Transmembrane Helix	223	241	0.91
Non-Cytoplasmic	242	245	0.79
Transmembrane Helix	246	268	0.81
Cytoplasmic	269	381	0.83
Transmembrane Helix	382	400	0.58
Non-Cytoplasmic	401	406	0.64
Transmembrane Helix	407	428	0.92
Cytoplasmic	429	434	0.63
Transmembrane Helix	435	454	0.89
Non-Cytoplasmic	455	468	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIPAPLSY FQNAQMSEDS HSSSVRSQND NQERQQHHDR QRLDNPESIS NGRPQSNFTR  60
   61 QVIEQDEEED EELTLKYGAK HVIMLFVPVT LCMVVVVATI KSVSFYTRKD GQLIYTPFTE 120
  121 DTETVGQRAL HSILNAAIMI SVIVVMTILL VVLYKYRCYK VIHAWLIVSS LLLLFFFSFI 180
  181 YLGEVFKTYN VAVDYITVAL LIWNFGVVGM IAIHWKGPLR LQQAYLIMIS ALMALVFIKY 240
  241 LPEWTAWLIL AVISVYDLVA VLCPKGPLRM LVETAQERNE TLFPALIYSS TMVWLVNMAE 300
  301 GDPEAQRRVP KNPKYSTQGT EREETQDTGT GSDDGGFSEE WEAQRDSHLG PHRSTPESRA 360
  361 AVQELSGSIL TSEDPEERGV KLGLGDFIFY SVLVGKASAT ASGDWNTTIA CFVAILIGLC 420
  421 LTLLLLAIFK KALPALPISI TFGLIFYFAT DYLVQPFMDQ LAFHQFYI