YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO1A5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	40	0.83
Non-Cytoplasmic	41	56	0.78
Transmembrane Helix	57	79	0.89
Cytoplasmic	80	86	0.77
Transmembrane Helix	87	109	0.91
Non-Cytoplasmic	110	161	0.83
Transmembrane Helix	162	183	0.71
Cytoplasmic	184	203	0.82
Transmembrane Helix	204	222	0.91
Non-Cytoplasmic	223	242	0.92
Transmembrane Helix	243	266	0.92
Cytoplasmic	267	316	0.95
Transmembrane Helix	317	338	0.88
Non-Cytoplasmic	339	353	0.92
Transmembrane Helix	354	376	0.90
Cytoplasmic	377	386	0.89
Transmembrane Helix	387	408	0.89
Non-Cytoplasmic	409	512	0.97
Transmembrane Helix	513	536	0.88
Cytoplasmic	537	547	0.85
Transmembrane Helix	548	570	0.80
Non-Cytoplasmic	571	600	0.85
Transmembrane Helix	601	622	0.87
Cytoplasmic	623	670	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGETEKRVAT HEVRCFSKIK MFLLALTWAY VSKSLSGIYM NTMLTQIERQ FDIPTSIVGF  60
   61 INGSFEIGNL LLIIFVSYFG TKLHRPIMIG VGCVIMGLGC FLMSLPHFLM GRYEYETTIS 120
  121 PTSNLSSNSF LCMENRSQTL KPTQDPAECI KEMKSLMWIY VLVGNIIRGI GETPIMPLGI 180
  181 SYIEDFAKSE NSPLYIGILE TGKVFGPIVG LLLGSFCASI YVDTGSVNTD DLTITPTDTR 240
  241 WVGAWWIGFL ICAGVNILSS IPFFFFPKTL PKEGLQDDVD GTNNDKEEKH REKAKEENRG 300
  301 ITKDFLPFMK SLSCNPIYML LILTSVLQIN AFINMFTFLP KYLEQQYGKS TAEVVLLIGV 360
  361 YNLPPICIGY LLIGFIMKKF KITVKKAAYM AFCLSLFEYL LYFLHFMITC DNFPVAGLTA 420
  421 SYEGVHHPLY VENKVLADCN RGCSCSTNSW DPVCGDNGLA YMSACLAGCK KSVGTGTNMV 480
  481 FQNCSCIRSS GNSSAVLGLC KKGPECANKL QYFLIMSVIG SFIYSITAIP GYMVLLRCIK 540
  541 PEEKSLGIGL HAFCTRVFAG IPAPIYFGAL IDRTCLHWGT LKCGEPGACR MYNINNFRRI 600
  601 YLVLPAALRG SSYLPALFIL ILMRKFQFPG EIDSSETELA EMKITVKKSE CTDVHGSPQV 660
  661 ENDGELKTRL