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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNTP1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSLRLFSIL LAAVVSGAQG WGYYGCNEEL VGPLYARSLG ASSYYGLFTT ARFARLHGIS  60
   61 GWSPRIGDPN PWLQIDLMKK HRIRAVATQG AFNSWDWVTR YMLLYGDRVD SWTPFYQQGH 120
  121 NATFFGNVND SAVVRHDLHY HFTARYIRIV PLAWNPRGKI GLRLGIYGCP YTSNILYFDG 180
  181 DDAISYRFQR GASQSLWDVF AFSFKTEEKD GLLLHTEGSQ GDYVTLELQG AHLLLHMSLG 240
  241 SSPIQPRPGH TTVSAGGVLN DLSWHYVRVD RYGREANLTL DGYVHRFVLN GDFERLNLEN 300
  301 EIFIGGLVGA ARKNLAYRHN FRGCIENVIY NRINIAEMAV QRHSRITFEG NVAFRCLDPV 360
  361 PHPINFGGPH NFVQVPGFPR RGRLAVSFRF RTWDLTGLLL FSRLGDGLGH VELMLSEGQV 420
  421 NVSIAQTGRK KLQFAAGYRL NDGFWHEVNF VAQENHAVIS IDDVEGAEVR VSYPLLIRTG 480
  481 TSYFFGGCPK PASRWGCHSN QTAFHGCMEL LKVDGQLVNL TLVEFRKLGY FAEVLFDTCG 540
  541 ITDRCSPNMC EHDGRCYQSW DDFICYCELT GYKGVTCHEP LYKESCEAYR LSGKYSGNYT 600
  601 IDPDGSGPLK PFVVYCDIRE NRAWTVVRHD RLWTTRVTGS SMDRPFLGAI QYWNASWEEV 660
  661 SALANASQHC EQWIEFSCYN SRLLNTAGGY PYSFWIGRNE EQHFYWGGSQ PGIQRCACGL 720
  721 DQSCIDPALH CNCDADQPQW RTDKGLLTFV DHLPVTQVVI GDTNRSSSEA QFFLRPLRCY 780
  781 GDRNSWNTIS FRTGAALRFP PIRANHSLDV SFYFRTSAPS GVFLENMGGP FCQWRRPYVR 840
  841 VELNTSRDVV FAFDIGNGDE NLTVHSDDFE FNDDEWHLVR AEINVKQARL RVDHRPWVLR 900
  901 PMPLQTYIWL EYDQPLYVGS AELKRRPFVG CLRAMRLNGV TLNLEGRANA SEGTFPNCTG 960
  961 HCTHPRFPCF HGGRCVERYS YYTCDCDLTA FDGPYCNHDI GGFFETGTWM RYNLQSALRS1020
 1021 AAQEFSHMLS RPVPGYEPGY IPGYDTPGYV PGYHGPGYRL PDYPRPGRPV PGYRGPVYNV1080
 1081 TGEEVSFSFS TSSAPAVLLY VSSFVRDYMA VLIKEDGTLQ LRYQLGTSPY VYQLTTRPVT1140
 1141 DGQPHSVNIT RVYRNLFIQV DYFPLTEQKF SLLVDSQLDS PKALYLGRVM ETGVIDPEIQ1200
 1201 RYNTPGFSGC LSGVRFNNVA PLKTHFRTPR PMTAELAEAM RVQGELSESN CGAMPRLVSE1260
 1261 VPPELDPWYL PPDFPYYHDD GWIAILLGFL VAFLLLGLVG MLVLFYLQNH RYKGSYHTNE1320
 1321 PKATHDSHPG GKAPLPPSGP AQAPAPTPAP TQVPTPAPAP ASGPGPRDQN LPQILEESRS1380
 1381 E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle