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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CD47_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPLAAALLL GSCCCGSAQL LLSKVKSVEF TSCNDTVVIP CKVLNVEAQS TDEMFVKWKL  60
   61 NKSYIFIYDG NKNSTTREQN FTSAKISVSD LLKGIASLTM DTHEAVVGNY TCEVTELSRE 120
  121 GKTVIELKNR PVSWFSTNEK ILIVIFPILA ILLFWGKFGI LTLKYKSSHT NKRIILLLVA 180
  181 GLALTLIVVV GAILFIPGEK PVKNASGLGL IVISTGILIL LQYNVFMTAF GMTSFTIAIL 240
  241 ITQVLGYVLA VVGMCLCIMA CEPVHGPLLI SGLGIIALAE LLGLVYMKFV ASNQRTIQPP 300
  301 RNN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle