YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MYP0_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGAPSSSP SPILAALLFS SLVLSPTLAI VVYTDREVYG AVGSQVTLHC SFWSSEWVSD  60
   61 DISFTWRYQP EGGRDAISIF HYAKGQPYID EVGTFKERIQ WVGDPSWKDG SIVIHNLDYS 120
  121 DNGTFTCDVK NPPDIVGKTS QVTLYVFEKV PTRYGVVLGA VIGGILGVVL LLLLLFYLIR 180
  181 YCWLRRQAAL QRRLSAMEKG KFHKSSKDSS KRGRQTPVLY AMLDHSRSTK AASEKKSKGL 240
  241 GESRKDKK

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	155	0.99
Transmembrane Helix	156	179	0.92
Cytoplasmic	180	248	0.97