YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXB2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWGTLQSIL GGVNKHSTSI GKIWLTVLFI FRIMILVVAA KEVWGDEQAD FVCNTLQPGC  60
   61 KNVCYDHYFP ISHIRLWALQ LIMVSTPALL VAMHVAYRRH EKKRKFMKGE IKNEFKDIEE 120
  121 IKTQKVRIEG SLWWTYTTSI FFRVIFEAVF MYVFYIMYNG FFMQRLVKCN AWPCPNTVDC 180
  181 FISRPTEKTV FTVFMISVSG ICILLNITEL CYLFIRYCSG KSKRPV

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	75	0.96
Transmembrane Helix	76	97	0.95
Cytoplasmic	98	131	0.98
Transmembrane Helix	132	156	0.87
Non-Cytoplasmic	157	190	0.97
Transmembrane Helix	191	215	0.88
Cytoplasmic	216	226	0.94