YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN4A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.89
Transmembrane Helix	127	150	0.88
Non-Cytoplasmic	151	194	0.67
Transmembrane Helix	195	215	0.61
Cytoplasmic	216	225	0.75
Transmembrane Helix	226	245	0.86
Non-Cytoplasmic	246	252	0.79
Transmembrane Helix	253	274	0.93
Cytoplasmic	275	416	0.90
Transmembrane Helix	417	441	0.87
Non-Cytoplasmic	442	566	0.71
Transmembrane Helix	567	589	0.82
Cytoplasmic	590	602	0.64
Transmembrane Helix	603	625	0.76
Non-Cytoplasmic	626	641	0.84
Transmembrane Helix	642	665	0.85
Cytoplasmic	666	685	0.86
Transmembrane Helix	686	710	0.89
Non-Cytoplasmic	711	740	0.89
Transmembrane Helix	741	760	0.78
Cytoplasmic	761	771	0.72
Transmembrane Helix	772	795	0.90
Non-Cytoplasmic	796	1024	0.63
Transmembrane Helix	1025	1048	0.74
Cytoplasmic	1049	1063	0.63
Transmembrane Helix	1064	1080	0.71
Non-Cytoplasmic	1081	1090	0.70
Transmembrane Helix	1091	1112	0.87
Cytoplasmic	1113	1140	0.81
Transmembrane Helix	1141	1167	0.86
Non-Cytoplasmic	1168	1263	0.65
Transmembrane Helix	1264	1288	0.87
Cytoplasmic	1289	1346	0.57
Transmembrane Helix	1347	1365	0.77
Non-Cytoplasmic	1366	1376	0.40
Transmembrane Helix	1377	1400	0.83
Cytoplasmic	1401	1406	0.37
Transmembrane Helix	1407	1430	0.83
Non-Cytoplasmic	1431	1463	0.36
Transmembrane Helix	1464	1498	0.72
Cytoplasmic	1499	1565	0.52
Transmembrane Helix	1566	1590	0.85
Non-Cytoplasmic	1591	1840	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSLPNLV PPGPHCLRPF TPESLAAIEQ RAVEEEARLQ RNKQMEIEEP ERKPRSDLEA  60
   61 GKNLPLIYGD PPPEVIGIPL EDLDPYYSDK KTFIVLNKGK AIFRFSATPA LYLLSPFSIV 120
  121 RRVAIKVLIH ALFSMFIMIT ILTNCVFMTM SNPPSWSKHV EYTFTGIYTF ESLIKMLARG 180
  181 FCIDDFTFLR DPWNWLDFSV ITMAYVTEFV DLGNISALRT FRVLRALKTI TVIPGLKTIV 240
  241 GALIQSVKKL SDVMILTVFC LSVFALVGLQ LFMGNLRQKC VRWPPPMNDT NTTWYGNDTW 300
  301 YSNDTWYGND TWYINDTWNS QESWAGNSTF DWEAYINDEG NFYFLEGSND ALLCGNSSDA 360
  361 GHCPEGYECI KAGRNPNYGY TSYDTFSWAF LALFRLMTQD YWENLFQLTL RAAGKTYMIF 420
  421 FVVIIFLGSF YLINLILAVV AMAYAEQNEA TLAEDQEKEE EFQQMLEKYK KHQEELEKAK 480
  481 AAQALESGEE ADGDPTHNKD CNGSLDASGE KGPPRPSCSA DSAISDAMEE LEEAHQKCPP 540
  541 WWYKCAHKVL IWNCCAPWVK FKHIIYLIVM DPFVDLGITI CIVLNTLFMA MEHYPMTEHF 600
  601 DNVLSVGNLV FTGIFTAEMV LKLIAMDPYE YFQQGWNIFD SFIVTLSLVE LGLANVQGLS 660
  661 VLRSFRLLRV FKLAKSWPTL NMLIKIIGNS VGALGNLTLV LAIIVFIFAV VGMQLFGKSY 720
  721 KECVCKIASD CNLPRWHMND FFHSFLIVFR ILCGEWIETM WDCMEVAGQA MCLTVFLMVM 780
  781 VIGNLVVLNL FLALLLSSFS ADSLAASDED GEMNNLQIAI GRIKWGIGFA KTFLLGLLRG 840
  841 KILSPKEIIL SLGEPGGAGE NAEESTPEDE KKEPPPEDKE LKDNHILNHV GLTDGPRSSI 900
  901 ELDHLNFINN PYLTIQVPIA SEESDLEMPT EEETDAFSEP EDIKKPLQPL YDGNSSVCST 960
  961 ADYKPPEEDP EEQAEENPEG EQPEECFTEA CVKRCPCLYV DISQGRGKMW WTLRRACFKI1020
 1021 VEHNWFETFI VFMILLSSGA LAFEDIYIEQ RRVIRTILEY ADKVFTYIFI LEMLLKWVAY1080
 1081 GFKVYFTNAW CWLDFLIVDV SIISLVANWL GYSELGPIKS LRTLRALRPL RALSRFEGMR1140
 1141 VVVNALLGAI PSIMNVLLVC LIFWLIFSIM GVNLFAGKFY YCVNTTTSER FDISVVNNKS1200
 1201 ESESLMYTGQ VRWMNVKVNY DNVGLGYLSL LQVATFKGWM DIMYAAVDSR EKEEQPHYEV1260
 1261 NLYMYLYFVI FIIFGSFFTL NLFIGVIIDN FNQQKKKFGG KDIFMTEEQK KYYNAMKKLG1320
 1321 SKKPQKPIPR PQNKIQGMVY DFVTKQVFDI SIMILICLNM VTMMVETDDQ SQLKVDILYN1380
 1381 INMVFIIIFT GECVLKMFAL RHYYFTIGWN IFDFVVVILS IVGLALSDLI QKYFVSPTLF1440
 1441 RVIRLARIGR VLRLIRGAKG IRTLLFALMM SLPALFNIGL LLFLVMFIYS IFGMSNFAYV1500
 1501 KKESGIDDMF NFETFGNSII CLFEITTSAG WDGLLNPILN SGPPDCDPTL ENPGTNVRGD1560
 1561 CGNPSIGICF FCSYIIISFL IVVNMYIAII LENFNVATEE SSEPLSEDDF EMFYETWEKF1620
 1621 DPDATQFIDY SRLSDFVDTL QEPLKIAKPN KIKLITLDLP MVPGDKIHCL DILFALTKEV1680
 1681 LGDSGEMDAL KQTMEEKFMA ANPSKVSYEP ITTTLKRKQE EVCAIKIQRA YRRHLLQRSV1740
 1741 KQASYMYRHS QDGNDDGAPE KEGLLANTMN KMYGHEKEGD GVQSQGEEEK ASTEDAGPTV1800
 1801 EPEPTSSSDT ALTPSPPPLP PSSSPPQGQT VRPGVKESLV