YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAR6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSANGSHCP YDDSFKYTLY GCMFSMVFVL GLISNCVAIY IFICALKVRN ETTTYMINLA  60
   61 MSDLLFVFTL PFRIFYFATR NWPFGDLLCK ISVMLFYTNM YGSILFLTCI SVDRFLAIVY 120
  121 PFKSKTLRTK RNAKIVCIAV WFTVMGGSAP AVFFQSTHSQ GNNTSEACFE NFPAATWKTY 180
  181 LSRIVIFIEI VGFFIPLILN VTCSSMVLRT LNKPVTLSRS KMNKTKVLKM IFVHLVIFCF 240
  241 CFVPYNINLI LYSLVRTQTF VNCSVGAAVR TMYPITLCIA VSNCCFDPIV YYFTSDTIQN 300
  301 SIKMKSWSVR RSDSRFSEVQ GTENFIQHNL QTLKNKIFDN ESAI

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	44	0.91
Cytoplasmic	45	54	0.85
Transmembrane Helix	55	77	0.90
Non-Cytoplasmic	78	96	0.88
Transmembrane Helix	97	118	0.84
Cytoplasmic	119	134	0.83
Transmembrane Helix	135	154	0.95
Non-Cytoplasmic	155	184	0.92
Transmembrane Helix	185	208	0.87
Cytoplasmic	209	229	0.88
Transmembrane Helix	230	252	0.89
Non-Cytoplasmic	253	344	0.61