YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNA3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVVPGDHLL EPEAAGGGGG DPPQGGCVSG GGCDRYEPLP PALPAAGEQD CCGERVVINI  60
   61 SGLRFETQLK TLCQFPETLL GDPKRRMRYF DPLRNEYFFD RNRPSFDAIL YYYQSGGRIR 120
  121 RPVNVPIDIF SEEIRFYQLG EEAMEKFRED EGFLREEERP LPRRDFQRQV WLLFEYPESS 180
  181 GPARGIAIVS VLVILISIVI FCLETLPEFR DEKDYPASPS QDVFEAANNS TSGASSGASS 240
  241 FSDPFFVVET LCIIWFSFEL LVRFFACPSK ATFSRNIMNL IDIVAIIPYF ITLGTELAER 300
  301 QGNGQQAMSL AILRVIRLVR VFRIFKLSRH SKGLQILGQT LKASMRELGL LIFFLFIGVI 360
  361 LFSSAVYFAE ADDPSSGFNS IPDAFWWAVV TMTTVGYGDM HPVTIGGKIV GSLCAIAGVL 420
  421 TIALPVPVIV SNFNYFYHRE TEGEEQAQYM HVGSCQHLSS SAEELRKARS NSTLSKSEYM 480
  481 VIEEGGMNHS AFPQTPFKTG NSTATCTTNN NPNSCVNIKK IFTDV

Type	Start	End	Confidence
Cytoplasmic	1	182	0.92
Transmembrane Helix	183	203	0.87
Non-Cytoplasmic	204	244	0.88
Transmembrane Helix	245	266	0.88
Cytoplasmic	267	276	0.82
Transmembrane Helix	277	295	0.82
Non-Cytoplasmic	296	305	0.66
Transmembrane Helix	306	324	0.78
Cytoplasmic	325	347	0.91
Transmembrane Helix	348	369	0.93
Non-Cytoplasmic	370	383	0.84
Transmembrane Helix	384	401	0.72
Cytoplasmic	402	408	0.58
Transmembrane Helix	409	430	0.89
Non-Cytoplasmic	431	525	0.75